Brightlike

sequences

The Brightlike gene is a Bright/Bdp paralog and the predicted gene shows the same 8 exon structure as both of these genes.

The predicted coding sequence for human Brightlike

Human Brightlike coding sequence

>Hs_brightlike_codingz_rev_11_17_03
atggaggccctgcagaagcagcaggcagctcggctggcccagggggtggggccattggcccctgcatgcccgctgctgccaccgcagcctcccctgcctgaccaccggaccctacaggcccctgagggggccttggggaatgttggggctgaggaagaggaagatgctgaagaagatgaggagaagcgggaggaagccggggcagaggaggaggcagctgaggagagccgtccaggggcccagggccccagctcgccttctagccagccccctggactccatccccacgagtggacctacgaggaacaattcaagcagctgtatgagctcgatgcagaccccaagaggaaggaatttctggatgacctgtttagcttcatgcaaaagagggggacgccagtgaaccgcgtgcccatcatggcgaagcaggtgctcgacctgtacgctctgtttcgcctggtgaccgccaagggcggcctggtggaagtcatcaaccgcaaagtgtggcgggaagtcacgcgcggcctcagcctacccaccaccatcacctcggccgccttcactctacgcacccagtacatgaagtacctgtacccgtacgagtgcgagactcgagcgctcagctccccaggggagctccaggccgccatagacagcaatcggcgcgagggccgtcgccaggcttacaccgctactccgctcttcggcttggcagggccgccccctcggggcgctcaggacccagccttgggtcccggccccgcccctccggcgacccagtccagccctggcccagcccagggttccacctccggcctgccagcgcatgcatgcgctcagctgagtccaagccctattaagaaacctgttcttctagaggagagtggaattccaaacccttgtctggcactgcctgtgggcctggcactgggacctacacgggagaaattggcaccagaggagcccccagagaagagagctgtgctgatggggcctatggacccacctcgaccttgcatgccccccagtttcctgccccgtggcaaggttcccctgaggggtacagaagagcggctggatgggcctcttaatctggcaggcagtggcatcagcagtatcaacatggccctagagatcaacggggtggtctacactggtgtcctctttgcccgccgccagcctgtgccagcttcccagggtccaaccaaccctgcacccccaccctccacagggcccccttccagcatcttgccctga

predicted protein

>Hs_brightlike_protein
mealqkqqaarlaqgvgplapacpllppqpplpdhrtlqapegalgnvgaeeeedaeedeekreeagaeeeaaeesrpgaqgpsspssqppglhphewtyeeqfkqlyeldadpkrkeflddlfsfmqkrgtpvnrvpimakqvldlyalfrlvtakgglvevinrkvwrevtrglslpttitsaaftlrtqymkylypyecetralsspgelqaaidsnrregrrqaytatplfglagppprgaqdpalgpgpappatqsspgpaqgstsglpahacaqlspspikkpvlleesgipnpclalpvglalgptreklapeeppekravlmgpmdpprpcmppsflprgkvplrgteerldgplnlagsgissinmaleingvvytgvlfarrqpvpasqgptnpapppstgppssilp


Mouse Brightlike coding sequence [note 2 N nucleotides added after 1st exon, unexpected frameshift?!]

>Mm_brightlike_coding
atggaggccctgcagaggcagcaggcagcacggctggcccaaaggNNgacagctgagcagagccatccaggagcccgatgtcccaactcaccttccagccagtctcctggaatccaaccacatgagtggacctacgaggaacagttcaagcagctgtatgaactcgatgcggaccccaagaggaaggagtttctggatgacctatttagcttcatgcagaagaggggtacgccagtgaaccgggtacccatcatggccaaacaggtgctggatctgtatgcgttgtttcgcttggtgacagccaagggaggcctggtggaagtcatcaaccgaaaagtgtggcgagaagtcacacgcggcctcagtttgcccaccaccatcacctctgccgccttcacgctccgtacacagtacatgaagtatttgtacccatacgagtgcgagacacgggcactcagttccccaggggagcttcaggctgccatagacagcaacaggcgtgagggccgccgccaggcttacaccgcggtcccgctcttcaacttagcagggcccacacctcggggcgctcctggccccgcctcgagtcatgggcccgccccgaccgcgaccccgaactgcccgggtcccacccagggttctgcttctggtttaccagcgcacgcttgcgctcaactgagcccgagcccagtaaagaaagaggagagtggaatcccaccccctcgtctggcgctacctatgggcttggcctcggaagctacaagggagaagctggcaccggaagaacctccggagaagagggctgtgctaatgggccccgtggactcacctcgactgggggcaccccccagtttcctgccccgtggcaaggctcccctaagggaagagcggttggatgggcccctcaatctggcaggcagtggcatcagcagtatcaacgtggcactagagatcaatggggtggtctacactggtatcctctttgctcgacgccaacctgtgccagcttccttgggtccaaccaatcctccacctctaccctctacagggcccccttccagtaccttgccctga

predicted protein

>Mm_brightlike_protein
mealqrqqaarlaqrxtaeqshpgarcpnspssqspgiqphewtyeeqfkqlyeldadpkrkeflddlfsfmqkrgtpvnrvpimakqvldlyalfrlvtakgglvevinrkvwrevtrglslpttitsaaftlrtqymkylypyecetralsspgelqaaidsnrregrrqaytavplfnlagptprgapgpasshgpaptatpncpgptqgsasglpahacaqlspspvkkeesgippprlalpmglaseatreklapeeppekravlmgpvdsprlgappsflprgkaplreerldgplnlagsgissinvaleingvvytgilfarrqpvpaslgptnppplpstgppsstlp*

Rat Brightlike coding sequence

> Rn_brightlike_coding
atggaggccctgcagaggcagcaggcagcacggctggcccaagggacagctgagcagagccatccgggagcccgatgtcccaattcaccatccggccagtcccctggaatccagccacatgagtggacctatgaggaacagttcaagcagctgtatgaactcgacgcggaccccaagaggaaggaatttctggatgacctgtttagcttcatgcagaagagggggacgccagtgaaccgggtgcccatcatggccaaacaggtcctggatctgtatgcgttgtttcgcttggtgacagccaagggaggcctggtggaagtcatcaaccgaaaagtgtggcgggaagtcacacgcggcctcagtttgcccaccaccatcacctctgccgccttcacactacgtacccagtacatgaagtatttgtacccatacgagtgcgagacgcgggcactcagttctccaggggagctccaggctgccatagacagcaaccggcgtgagggacgtcgccaggcctacaccacggtcccgctcttcaacttagcaggacccacacctcggggcgctcctggtcccgcctcgagtcatggccccgccccgaccacgaccccgaattgccccggttccacccagggttctgcttctggcttaccagcgcatgcttgtgctcaactgagccccagcccagtaaagaaagaggagagtggaatcccaccccctcgtctggcgatacctgtgggcttggccttggaggctgcacgggagaagctggcaccagaagagcctccagagaagagggctgtgctgatgggccccatggatccacctcgattgggagcaacccccagtttcctgccccgtggcaaggctcccctaagggaagagcggttggatgggcccctcaatctggcaggcagtggcatcagcagtatcaacatggcgctagagatcaatggggttgtctacactggtatcctctttgcccgacgccagcctgtgccagcttccttgggtccgaccaatcctccacccccaccctctacagggcccccttccagcaccttaccctga

predicted protein

> Rn_brightlike_protein
mealqrqqaarlaqgtaeqshpgarcpnspsgqspgiqphewtyeeqfkqlyeldadpkrkeflddlfsfmqkrgtpvnrvpimakqvldlyalfrlvtakgglvevinrkvwrevtrglslpttitsaaftlrtqymkylypyecetralsspgelqaaidsnrregrrqayttvplfnlagptprgapgpasshgpaptttpncpgstqgsasglpahacaqlspspvkkeesgippprlaipvglaleaareklapeeppekravlmgpmdpprlgatpsflprgkaplreerldgplnlagsgissinmaleingvvytgilfarrqpvpaslgptnpppppstgppsstlp*

Protein alignment of Bright, Bdp, Brightlike

data regarding chromosomal irregularities taken from CGAP website.

to generate this information, just input the chromosome band (e.g. 9p13) into box labelled breakpoint and check box marked structural aberrations.

http://cgap.nci.nih.gov/Chromosomes/RecurrentAberrations