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Search Results ( 73 matches)

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MatInspector Release professional 6.2.1 Jun. 2003 Wed Aug 6 17:59:10 2003

Solution parameters:

Sequence file: hs500.seq (720 bps)
Family matches: yes
MatInspector library: Matrix Family Library Version 3.1.2 June 2003
Selected groups
(core/matrix sim):
  • ALL vertebrates.lib (0.75/Optimized)
Sequence
representation:
  • Basepairs marked red show a high information content,i.e. the matrix exibits a high conservation (ci-value > 60) at this position.
  • Basepairs in capital letters denote the core sequence used by MatInspector.

Inspecting sequence hs500 (1 - 720):

  Family/matrix Further Information Opt.PositionStr.Core sim. Matrix sim.Sequence
from - toanchor
  V$TBPF/ATATA.01 Avian C-type LTR TATA box 0.81 5 - 2113 (+)0.7500.833ctctattTAACtgtctc
  V$HOXF/EN1.01 Homeobox protein engrailed (en-1)0.77 6 - 2214 (+)1.0000.828tctaTTTAactgtctct
  V$IRFF/IRF3.01 Interferon regulatory factor 3 (IRF-3)0.85 13 - 2720 (-)0.7580.862tagaaagaGACAgtt
  V$HOXF/CRX.01 Cone-rod homeobox-containing transcription factor / otx-like homeobox gene0.94 18 - 3426 (-)1.0000.947gagagATTAgaaagaga
  V$GATA/GATA3.01 GATA-binding factor 30.91 22 - 3428 (-)0.8240.929gagaGATTagaaa
  V$IRFF/IRF3.01 Interferon regulatory factor 3 (IRF-3)0.85 37 - 5144 (-)0.7580.863aggaaacgGACAgaa
  V$VMYB/VMYB.02 v-Myb0.90 40 - 5045 (-)1.0000.923ggaAACGgaca
  V$NFKB/CREL.01 c-Rel0.91 57 - 7164 (+)1.0000.956cttggtctTTCCcta
  V$FAST/FAST1.01 FAST-1 SMAD interacting protein0.81 81 - 9588 (+)1.0000.853ccctgtcTATTtgtc
  V$MEIS/MEIS1.01 Binding site for monomeric Meis1 homeodomain protein0.95 138 - 146142 (-)1.0001.000gtGACAggt
  V$PBXC/PBX1_MEIS1.03 Binding site for a Pbx1/Meis1 heterodimer0.76 137 - 153145 (-)1.0000.798gacctaagTGACaggta
  V$BRAC/BRACH.01 Brachyury0.69 137 - 161149 (+)1.0000.733tacctgtcacttAGGTcttttatct
  V$GATA/GATA1.05 GATA-binding factor 10.88 152 - 164158 (-)1.0000.984aacaGATAaaaga
  V$XBBF/RFX1.01 X-box binding protein RFX10.89 158 - 176167 (-)1.0000.899aggtagaggaGCAAcagat
  V$EKLF/EKLF.01 Erythroid krueppel like factor (EKLF)0.89 181 - 191186 (-)1.0000.940cagggaGGGTa
  V$ECAT/NFY.02 Nuclear factor Y (Y-box binding factor)0.91 196 - 210203 (+)1.0000.910tctacCCAAtattct
  V$OCTP/OCT1P.01 Octamer-binding factor 1, POU-specific domain0.86 200 - 212206 (+)0.9800.902cccaatATTCtat
  V$XSEC/STAF.01 Se-Cys tRNA gene transcription activating factor0.77 196 - 218207 (+)1.0000.781tctaCCCAatattctatctctct
  V$CLOX/CDP.01 cut-like homeodomain protein0.75 201 - 217209 (+)1.0000.852ccAATAttctatctctc
  V$EVI1/EVI1.05 Ecotropic viral integration site 1 encoded factor0.80 203 - 219211 (-)0.7630.827gagagagatagAATAtt
  V$GATA/GATA2.02 GATA-binding factor 20.90 205 - 217211 (-)1.0000.940gagaGATAgaata
  V$RCAT/CLTR_CAAT.01 Mammalian C-type LTR CCAAT box0.75 200 - 224212 (+)1.0000.796cCCAAtattctatctctctccatct
  V$AP1F/AP1FJ.01 Activator protein 10.97 281 - 301291 (-)1.0000.980tggggTGACacagagactgag
  V$CREB/TAXCREB.01 Tax/CREB complex0.81 282 - 302292 (-)1.0000.839gtggggTGACacagagactga
  V$EBOX/SREBP.02 Sterol regulatory element binding protein0.80 291 - 305298 (+)1.0000.971gtgTCACcccacttc
  V$NKXH/HMX3.01 H6 homeodomain HMX3/Nkx5.1 transcription factor0.89 296 - 308302 (-)1.0000.914acagAAGTggggt
  V$EVI1/EVI1.04 Ecotropic viral integration site 1 encoded factor0.77 333 - 349341 (-)0.7600.790gGAGAtgtgaaaataga
  V$BRAC/BRACH.01 Brachyury0.69 335 - 359347 (-)0.7500.786acaatgacagggAGATgtgaaaata
  V$MEIS/MEIS1.01 Binding site for monomeric Meis1 homeodomain protein0.95 348 - 356352 (-)1.0000.969atGACAggg
  V$PAX5/PAX5.03 PAX5 paired domain protein0.80 352 - 380366 (+)0.7890.862gtcattgTCTCtgtcggacatcccccttc
  V$CREB/TAXCREB.02 Tax/CREB complex0.71 357 - 377367 (+)0.7500.758tgtctcTGTCggacatccccc
  V$NFKB/NFKAPPAB50.01 NF-kappaB (p50)0.83 364 - 378371 (-)1.0000.890agGGGGatgtccgac
  V$ETSF/ELK1.01 Elk-10.82 364 - 380372 (-)0.8660.820gaagggGGATgtccgac
  V$GKLF/GKLF.01 Gut-enriched Krueppel-like factor0.91 372 - 386379 (-)0.9500.922aaaggagaagGGGGa
  V$GKLF/GKLF.01 Gut-enriched Krueppel-like factor0.91 374 - 388381 (-)1.0000.946gaaaaggagaAGGGg
  V$BARB/BARBIE.01 barbiturate-inducible element0.88 376 - 390383 (-)1.0000.917aagaAAAGgagaagg
  V$GKLF/GKLF.01 Gut-enriched Krueppel-like factor0.91 381 - 395388 (-)0.9360.948agagaaagaaAAGGa
  V$IRFF/IRF2.01 Interferon regulatory factor 20.80 386 - 400393 (-)1.0000.809gggagagaGAAAgaa
  V$CLOX/CDPCR3.01 cut-like homeodomain protein0.75 416 - 432424 (-)0.9870.768ggaccaagagacATCGg
  V$CREB/CREB.02 cAMP-responsive element binding protein0.88 424 - 444434 (-)1.0000.927agagggTGACggggaccaaga
  V$EKLF/EKLF.01 Erythroid krueppel like factor (EKLF)0.89 437 - 447442 (-)1.0000.955cagagaGGGTg
  V$EVI1/EVI1.01 Ecotropic viral integration site 1 encoded factor0.72 440 - 456448 (-)0.7640.773tgagCAGAtcagagagg
  V$GATA/GATA3.02 GATA-binding factor 30.91 442 - 454448 (-)1.0000.911agcAGATcagaga
  V$BEL1/BEL1.01 Bel-1 similar region (defined in Lentivirus LTRs)0.78 447 - 469458 (-)0.7800.829aggactggaagagTGAGcagatc
  V$ETSF/NRF2.01 Nuclear respiratory factor 20.86 453 - 469461 (-)1.0000.904aggactGGAAgagtgag
  V$AP1F/AP1.03 Activator protein 10.94 460 - 480470 (-)1.0000.945gccatTGACtgaggactggaa
  V$PCAT/CAAT.01 cellular and viral CCAAT box0.90 473 - 483478 (-)0.8560.919atggCCATtga
  V$HOXF/PTX1.01 Pituitary Homeobox 1 (Ptx1)0.79 477 - 493485 (+)0.7890.790tggccaTTTGattcccc
  V$AP4R/TH1E47.01 Thing1/E47 heterodimer, TH1 bHLH member specific expression in a variety of embryonic tissues0.93 492 - 508500 (-)1.0000.931aacaggaCCAGacccgg
  V$SMAD/SMAD3.01 Smad3 transcription factor involved in TGF-beta signaling0.99 496 - 504500 (+)1.0000.993GTCTggtcc
  V$AREB/AREB6.04 AREB6 (Atp1a1 regulatory element binding factor 6)0.98 501 - 513507 (+)1.0001.000gtcctGTTTctgt
  V$IRFF/ISRE.01 Interferon-stimulated response element0.81 504 - 518511 (-)1.0000.820ggtgaacaGAAAcag
  V$XBBF/MIF1.01 MIBP-1 / RFX1 complex0.76 502 - 520511 (-)0.8500.789gaggtgaacaGAAAcagga
  V$FKHD/FREAC4.01 Fork head RElated ACtivator-40.78 506 - 522514 (-)1.0000.799cagaggtgAACAgaaac
  V$IKRS/IK1.01 Ikaros 1, potential regulator of lymphocyte differentiation0.92 518 - 530524 (+)1.0000.950ctctGGGAaagcc
  V$MYT1/MYT1.01 MyT1 zinc finger transcription factor involved in primary neurogenesis0.75 526 - 538532 (-)0.7500.756agaAAGAtggctt
  V$YY1F/YY1.01 Yin and Yang 10.84 524 - 542533 (+)1.0000.842gaaagCCATctttctgcct
  V$COUP/COUP.01 COUP antagonizes HNF-4 by binding site competition or synergizes by direct protein - protein interaction with HNF-40.81 552 - 566559 (+)1.0000.861tGACCcctgcacttc
  V$ETSF/GABP.01 GABP: GA binding protein 0.85 557 - 573565 (-)1.0000.878attcagGGAAgtgcagg
  V$STAT/STAT.01 Signal transducers and activators of transcription0.87 559 - 577568 (-)1.0000.960atggattcagGGAAgtgca
  V$XSEC/STAF.01 Se-Cys tRNA gene transcription activating factor0.77 562 - 584573 (+)0.7820.822acttCCCTgaatccatgaccacc
  V$RXRF/FXRE.01 Farnesoid X - activated receptor (RXR/FXR dimer)0.79 570 - 586578 (+)1.0000.790gaatccaTGACcacctc
  V$RXRF/VDR_RXR.01 VDR/RXR Vitamin D receptor RXR heterodimer site0.89 575 - 591583 (-)0.8400.901agggggagGTGGtcatg
  V$ZBPF/ZBP89.01 Zinc finger transcription factor ZBP-890.93 579 - 593586 (+)1.0000.958accacctCCCCctgt
  V$EGRF/EGR2.01 Egr-2/Krox-20 early growth response gene product0.79 590 - 604597 (+)0.7760.799ctGTGTtggggggct
  V$RREB/RREB1.01 Ras-responsive element binding protein 10.79 596 - 610603 (-)1.0000.861cCCCAgagcccccca
  V$NKXH/NKX25.02 Homeo domain factor Nkx-2.5/Csx, tinman homolog low affinity sites0.88 628 - 640634 (+)1.0000.950ccaTAATtccctc
  V$XSEC/STAF.02 Se-Cys tRNA gene transcription activating factor0.84 623 - 645634 (+)1.0000.861agcaCCCAtaattccctccccca
  V$MAZF/MAZ.01 Myc associated zinc finger protein (MAZ)0.90 632 - 644638 (-)1.0000.900ggggGAGGgaatt
  V$ZBPF/ZBP89.01 Zinc finger transcription factor ZBP-890.93 633 - 647640 (+)1.0000.982attccctCCCCcaca
  V$AP2F/AP2.01 Activator protein 20.89 640 - 652646 (+)0.9040.936ccCCCAcaggcgg
  V$AP4R/AP4.01 Activator protein 40.97 687 - 703695 (+)1.0000.994cccctCAGCtgggggac
  V$REBV/EBVR.01 Epstein-Barr virus transcription factor R0.81 685 - 705695 (-)0.7610.817cagtcccccagctgaGGGGgt

73 matches found.

A total of 73 matches were found in 1 sequences!

Sequences searched: 1 (720 bp).

Reference for MatInspector:
Quandt, K. Frech, K. Karas, H. Wingender, E. and Werner, T.
MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data
Nucleic Acids Research 23, 4878-4884 (1995)
Analyze a new sequence via the MatInspector input form


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